Merged dev1 with master

Conflicts:
	src/test_api.py
added gitignore file and removed history for test_api.py
Putting passwords in file that is in gitignore
Merge branch 'master' of github.com:iMicrobe/foundation-python

Conflicts:
	src/foundation/FoundationApi.py
Removed FoundationJob.py from top level src dir
opps
Merge branch 'master' of github.com:iMicrobe/foundation-python
removed submit.py
Merge branch 'master' of github.com:iMicrobe/foundation-python
Removed submit.py