init commit
started with testing rovFileData object contents
mysql mistyping fixes
file location fixes
trying to scrub bad characters from distiller xml
unzipstream works
updated tests
worked on dataextractor
added xml filter should there be bad characters in xml
some fixes concerning reading the distiller files
started on writing data to disk
started with handling weird header input from distiller files
started with some javadoc
testing output from data extraction and compare it to actual results
still trying to work out a decent way to handle the header
continued with the testing,
fixed some bugs with the data extractions
added more javadoc,
changed FileDAO to more generic format
added more assertions to the data extractor test
added outputformatter class to create an outputstring from a distiller file
added HitRatioto distinguish
made fixes in the code testing brought to light
continued on gui
added more write options
worked more on combination test
added output selection frame
worked on project selection
bunch of rewrites because of actually running the code
changed a lot of stuff around for more flexibility
added interface for peptide and protein drawing modes
started with splitting up the fasta based and database based data retrieval and preparation
added a properties controller to store and retrieve user preferences
more fasta support added, fasta files are now converted to internal projects and then handled by the code
added more support for quantitation data visualisation
changed a lot of stuff around for more flexibility
added interface for peptide and protein drawing modes
started with splitting up the fasta based and database based data retrieval and preparation
added a properties controller to store and retrieve user preferences
more fasta support added, fasta files are now converted to internal projects and then handled by the code
added more support for quantitation data visualisation