check of curl returns any data before parsing
reparse whole vep file for each chr
removing bash-specific pythonpath setting
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop
added shell detection to python updater, updated warehouse host
adding owner information to pipeline disk usage
Making this available publicly
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop
vcfcheck hotfix: Handle properly sample stats, cases where AC,AN are present in the header but not in the lines
script for checking updater logs and emailing any errors
The ploidy=1 HET genotype check made less strict: allow non-zero GL as long as it does not come out as the most likely
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop
adding phase2 database with minimum run id set to restrict to recent lanes only
created new min flag as other flag was for error reporting
fix typo
create file and write a header even if no vcf records
remove ensembl mods INC addition
fix curl cmd check
adding no pending lanes flag to g1k_track_phase2_vrpipe updates
Improvements and fixes in vcfquery, vcfgtcheck, vcffilter.