HMM forward/backward equations for X chr
HMM calcgenoprob for X chr
HMM estmap for X chr
Merge branch 'master' into Xchr
HMM for X chr: separate all_true_geno for X chr
Fixed d2tags
simple versions of calc_geno_prob and estmap
First stab at BC/F2 functions for HMM for X chr
a few missing semi-colons
This compiles
This compiles
Modify output
Note
changed attribute for CSV reader
Moved unit tests to bottom
Moving phenotype function
Fix template business for estmap and calc_geno_prob
Add a bunch of overrides in cross.d
Moving stuff from manip to phenotype.d
Moving stuff from manip to phenotype.d