Calculate kmer sizes, coverage etc for fastq files with reads of different lengths
Merge branch 'master' of github.com:sanger-pathogens/assembly_improvement into variable_read_length_tools
Merge branch 'master' of github.com:nds/assembly_improvement into add_sga_step
Code to calculate kmer size and coverage for a fastq file
Can now deal with a zipped fastq file
Add code to perform digital normalisation
Directory renamed to DigitalNormalisation
Code to test digital normalisation
Script to run digital normalisation
Added option to name the output to something other than default
Corrected command line parameters to run fastq_tools
Merge branch 'master' of github.com:sanger-pathogens/assembly_improvement into subsampling
Added missing if statement
Script to run digital normalisation
Merge branch 'add_sga_step' of github.com:nds/assembly_improvement into add_sga_step
Add a minimum median read length so that kmer values dont get too low
Merge branch 'add_sga_step' of github.com:nds/assembly_improvement into add_sga_step
Changed default desired coverage to 80 instead of 200
Merge branch 'master' of github.com:sanger-pathogens/assembly_improvement into add_sga_step
Merge branch 'subsampling' of github.com:nds/assembly_improvement into subsampling