Maven: Work with m2e Plugin and Conventional Improvements

Fixed the maven-eclipse-"bug" related to the replacer interfering with the lifecycle feature. (Unknown lifecycle)
https://code.google.com/p/maven-replacer-plugin/issues/detail?id=66

Fixed the pom.xml to actually know where their (unconventional pathed) source is 

http://stackoverflow.com/questions/224373/handling-unconventional-source-directory-for-a-web-project-in-maven