Fixed the problem where the timer increments regardless of the pause.  Also fixed the problem where the boat moves during pause when resizing the screen.  Fixed the spawning of the correct number of Jellyfish by moving the fileInputStream for the saved state.  Fixed problem where timer was not stopping clock when pause was in place (Time would increase in background regardless that the game was paused.) Also serialized the timer in case the game should start back at the old time.  Added extra comments and some Javadoc comments into the FishAnimationEnvironment.