Working on CLIP cluster finding
Motifs module
meme utils
BAM module
BAM utils
Utilities for running MEME, fetching clip seqs and doing motif analysis
filtering clusters
Crimes against humanity with BED
UCSC utilities
Revising clip seq pipeline
Outputting reads as BED
Assigning clusters to strands according to genes after merge
Homer utils
Script for extracting event seqs
Kmer utils
Fixed order of output for GFF during sanitation
Revs
revs
extracting event sequences from GFF annotation