Add the include packages first to speed things up.
Always use RunId.getId(), not to depend on toString()
Fix the classpath.
Couple fixes and improvements.
- Added kill to WeaveController
- Added lookup to WeaveRunner to lookup by name.
- Fixes behavior of container class loader
- Have way to add extra resources and class paths.
- Fixes dependency tracing.
Merge remote-tracking branch 'upstream/master' into feature/v0.1
Refactor log configuration to allow user configure logging properties.
Fix shutdown error
Merge pull request #12 from chtyim/feature/v0.1

Bug fixes and improvement.