Change uri format

The new format is /package/#module.subcomponent.
Fix bug in handling of included items
Move source files into a source directory
Add bin-doc sources
Move .gitignore files
Update makefile and remove install target
Add opam directory rule
Add scripts
Update Makefile
Fix scripts and makefile, and add dummy packages and url files
Fix scripts to work with Core
Use more portable awk invocation
Add a gitignore file
Fix type links
Filter-pervasives
Improve packages list
Fix handling of patterns in cmt files
Mark internal links with the "ocaml_internal" class
Keep track of the current module in the hierarchy
Fix local links on includes and aliases