just to be sure to use bash shell
added sugar coating to simplify assignment of PlateWell row and column
added kb.get_well_on_plate()
Merge branch 'plate_well_row_column' into develop
added illumina and affy models python classes
bug fix
bug fix
bug fix
added a notebook on how to handle microarray chips.
kb_query in phase with new markers array style

can query on markers, disabled alignment dump because it is really a
VariantCallSupport and it is best to do it with purpose specific
scripts.
removed any reference to alignment from the cli.
Fixes #751.
added col selection to kb.genomics.get_markers_array_rows()
bug probably fixed and some code cleanup done
missing file
Merge branch 'ped_writer' into develop

Bug fix and minor code cleanup.
allele_flip -> permutation
added manage_db
bug fixes
missing ehr stuff