committing changes in /etc after apt run

Package changes:
-at-spi2-atk 2.8.1-1
-at-spi2-core 2.8.0-1
-atk 2.8.0-1
+at-spi2-atk 2.10.0-1
+at-spi2-core 2.10.0-1
+atk 2.10.0-1
-baobab 3.8.2-1
+baobab 3.10-1
+bluez 5.9-1
-bluez4 4.101-3
-clutter 1.14.4-3
-clutter-gtk 1.4.4-3
-cogl 1.14.0-5
+clutter 1.16.0-1
+clutter-gtk 1.4.4-4
+cogl 1.16.0-2
-dconf 0.16.1-1
-desktop-file-utils 0.21-1
-device-mapper 2.02.100-1
+dconf 0.18.0-1
+desktop-file-utils 0.22-1
+device-mapper 2.02.103-1
-evince 3.8.3-1
-evolution-data-server 3.8.5-1
+evince 3.10.0-2
+evolution-data-server 3.10.0-1
-file-roller 3.8.4-1
+file-roller 3.10.0-2
-gcr 3.8.2-1
+gcr 3.10.0-1
-gdk-pixbuf2 2.28.2-1
+gdk-pixbuf2 2.30.0-1
+geoclue2 1.99.4-1
+geocode-glib 3.10.0-1
-gjs 1.36.1-2
+gjs 1.38.1-1
-glib-networking 2.36.2-1
-glib2 2.36.4-1
+glib-networking 2.38.0-1
+glib2 2.38.0-1
-glibmm 2.36.2-1
+glibmm 2.37.93-1
-gnome-bluetooth 3.8.1-2
-gnome-calculator 3.8.2-1
-gnome-color-manager 3.8.3-1
-gnome-common 3.7.4-2
-gnome-control-center 3.8.5-1
-gnome-desktop 1:3.8.4-1
-gnome-icon-theme 3.8.3-1
-gnome-icon-theme-symbolic 3.8.3-1
-gnome-keyring 3.8.2-1
-gnome-menus 3.8.0-2
+gnome-bluetooth 3.10.0-1
+gnome-calculator 3.10.0-1
+gnome-color-manager 3.10.0-1
+gnome-common 3.10.0-1
+gnome-control-center 3.10.0-1
+gnome-desktop 1:3.10.0-1
+gnome-icon-theme 3.10.0-1
+gnome-icon-theme-symbolic 3.10.0-1
+gnome-keyring 3.10.0-1
+gnome-menus 3.10.0-1
-gnome-online-accounts 3.8.3-1
-gnome-panel 3.8.0-1
+gnome-online-accounts 3.10.0-1
+gnome-panel 3.8.0-2
-gnome-screenshot 3.8.3-1
-gnome-session 3.8.4-1
-gnome-settings-daemon 3.8.5-1
-gnome-shell 3.8.4-1
-gnome-themes-standard 3.8.4-1
-gnome-tweak-tool 3.8.1-1
+gnome-screenshot 3.10.0-1
+gnome-session 3.10.0-2
+gnome-settings-daemon 3.10.0-1
+gnome-shell 3.10.0.1-1
+gnome-themes-standard 3.10.0-1
+gnome-tweak-tool 3.10.0-2
-gobject-introspection 1.36.0-1
+gobject-introspection 1.38.0-1
-gsettings-desktop-schemas 3.8.2-1
+gsettings-desktop-schemas 3.10.0-1
-gst-plugins-base-libs 1.0.10-1
-gstreamer 1.0.10-1
+gst-plugins-base-libs 1.2.0-1
+gstreamer 1.2.0-1
-gtk-update-icon-cache 2.24.20-1
-gtk2 2.24.20-1
+gtk-update-icon-cache 2.24.21-2
+gtk2 2.24.21-2
-gtk3 3.8.4-1
+gtk3 3.10.0-2
-gtksourceview3 3.8.2-1
+gtksourceview3 3.10.0-1
-gvfs 1.16.3-2
-gvfs-obexftp 1.16.3-2
+gvfs 1.18.2-1
-intel-dri 9.2.0-2
+intel-dri 9.2.1-1
-json-glib 0.16.0-1
+json-glib 0.16.2-1
-lib32-atk 2.8.0-1
+lib32-atk 2.10.0-1
-lib32-gdk-pixbuf2 2.28.2-1
+lib32-gdk-pixbuf2 2.30.0-1
-lib32-glib2 2.36.4-1
+lib32-glib2 2.38.0-1
-lib32-gtk2 2.24.20-2
+lib32-gtk2 2.24.21-1
-lib32-mesa 9.2.0-1
-lib32-mesa-libgl 9.2.0-1
+lib32-mesa 9.2.1-1
+lib32-mesa-libgl 9.2.1-1
-lib32-pango 1.34.1-1
+lib32-pango 1.36.0-1
+libevdev 0.4-2
-libgdm 3.8.4-1
-libgee 0.10.4-1
+libgdm 3.10.0-1
+libgee 0.12.0-1
-libgnome-keyring 3.8.0-1
+libgnome-keyring 3.10.0-1
-libgweather 3.8.2-1
+libgweather 3.10.0-1
-libnautilus-extension 3.8.2-1
+libnautilus-extension 3.10.0-1
-libnotify 0.7.5-1
+libnotify 0.7.6-1
-libreoffice-calc 4.1.1-2
-libreoffice-common 4.1.1-2
-libreoffice-de 4.1.1-1
-libreoffice-draw 4.1.1-2
-libreoffice-en-US 4.1.1-2
-libreoffice-gnome 4.1.1-2
-libreoffice-impress 4.1.1-2
-libreoffice-writer 4.1.1-2
-librsvg 1:2.37.0-1
+libreoffice-calc 4.1.2-1
+libreoffice-common 4.1.2-1
+libreoffice-de 4.1.2-1
+libreoffice-draw 4.1.2-1
+libreoffice-en-US 4.1.2-1
+libreoffice-gnome 4.1.2-1
+libreoffice-impress 4.1.2-1
+libreoffice-writer 4.1.2-1
+librsvg 1:2.39.0-2
-libsasl 2.1.26-4
-libsecret 0.15-2
+libsasl 2.1.26-6
+libsecret 0.16-1
-libsoup 2.42.2-1
+libsoup 2.44.0-1
-libtracker-sparql 0.16.2-1
+libtracker-sparql 0.16.2-2
-lvm2 2.02.100-1
+lvm2 2.02.103-1
-mash 0.2.0-2
+mash 0.2.0-3
-mesa 9.2.0-2
+mesa 9.2.1-1
-mesa-libgl 9.2.0-2
+mesa-libgl 9.2.1-1
-mutter 3.8.4-1
+mutter 3.10.0.1-1
+mutter-wayland 3.10.0.1-2
-nautilus 3.8.2-1
+nautilus 3.10.0-1
-nautilus-sendto 3.8.0-2
+nautilus-sendto 3.8.1-1
-network-manager-applet 0.9.8.4-1
-networkmanager 0.9.8.4-1
+network-manager-applet 0.9.8.4-2
+networkmanager 0.9.8.6-1
-nspr 4.10-2
-nss 3.15.1-1
+nspr 4.10.1-1
+nss 3.15.2-1
-p11-kit 0.18.4-1
+p11-kit 0.20.1-1
-pango 1.34.1-1
+pango 1.36.0-1
-poppler 0.24.1-1
-poppler-glib 0.24.1-1
+poppler 0.24.2-1
+poppler-glib 0.24.2-1
-pygobject-devel 3.8.3-1
+pygobject-devel 3.10.0-1
-python2-atspi 2.8.0-1
+python2-atspi 2.10.0-1
-python2-gnomekeyring 2.32.0-12
+python2-gnomekeyring 2.32.0-13
-python2-gobject 3.8.3-1
+python2-gobject 3.10.0-1
-s-nail 14.4.3-1
+s-nail 14.4.4-1
-seahorse 3.8.2-1
+seahorse 3.10.0-1
-tar 1.26-4
+tar 1.27-1
-tracker 0.16.2-1
+tracker 0.16.2-2
-tzdata 2013f-1
+tzdata 2013g-1
-usb_modeswitch 1.2.7-1
+usb_modeswitch 2.0.1-1
-webkitgtk 2.0.4-1
+webkitgtk 2.2.0-1
-xf86-input-evdev 2.8.1-1
+xf86-input-evdev 2.8.2-1
-xorg-server 1.14.3-1
-xorg-server-common 1.14.3-1
+xorg-server 1.14.3-2
+xorg-server-common 1.14.3-2
-yelp 3.8.1-1
-yelp-xsl 3.8.1-1
-youtube-dl 2013.10.01.1-1
+yelp 3.10.0-1
+yelp-xsl 3.10.0-1
+youtube-dl 2013.10.06-1