[ADD] htseq modified from Texas Lab
[ADD] add galGal3,4 mm9,10 reference path
[FIX] chicken reference to galGal4, show ref path message
[MOD] show unzip time
[ADD] finish commenting, select proper # of process, add --ssd, --remove-fastq option
[MOD] change out_dir in Project
[MOD] update code from 建樂
Merge branch 'tophat' into develop
[Tophat] fix minor functions
Merge branch 'htseq' into develop
[HTSeq] add 建樂學長 code
[TopHat][ADD] now default give gene annotation and extra args for Tophat
[TopHat][MOD] rewrite the part for reference determination
[Tophat][FIX] accept extra args and output err msg if tophat ends with error
Merge branch 'fix_tophat' into develop
Merge branch 'develop'

* develop:
  [Tophat][FIX] accept extra args and output err msg if tophat ends with error
  [TopHat][ADD] now default give gene annotation and extra args for Tophat [TopHat][MOD] rewrite the part for reference determination
  [MOD] update code from 建樂
  [MOD] change out_dir in Project
  [ADD] finish commenting, select proper # of process, add --ssd, --remove-fastq option
  [MOD] show unzip time
  [FIX] chicken reference to galGal4, show ref path message
  [ADD] add galGal3,4 mm9,10 reference path
  [ADD] htseq modified from Texas Lab