Add docs
Add docs
Merge branch 'develop'
Add sorting of samples. Change pfx relpath
Partition subplot into several plots due to difficulties making plots fit
Make sure plot functions use correct number of samples
Add sequence census plot
Make PipedJobRunner use tmp output file names
Merge branch 'hotfix/piped_task_use_tmpfile'
Add determine_read_type function
Merge branch 'hotfix/get_read_suffix' into develop