Cleanup indentation in umake.pl
Add Hyun's updates to umake - gotcloudroot, copyglf, and chroms settings
align.pl - add abililty to specify gotcloudroot
align/umake cleanup perldoc
Dump the configuration settings to a file in the output directory.
Run dos2unix on glfMerge/Main.cpp
Update glfMerge to skip glf files that only have a header
Add vc option to gotcloud that uses the RUN_ configured on/off steps for umake