Merge pull request #234 from jaredbischof/develop

Fixed call to retrieve md5s for a given job and function.
fix id for filter set
bug fix in ontology pull
Merge pull request #236 from teharrison/develop

minor api bug fixes
minor fixes
fix ontology source
fixed notebook upload
Merge pull request #237 from teharrison/develop

api fix to ontology return
added passage of cutoffs to Analysis::get_md5_abundaces
Merge pull request #238 from teharrison/develop

added passage of cutoffs to Analysis::get_md5_abundaces
added option to not return full metagenome metadata in matrix api
Merge pull request #239 from teharrison/develop

added option to not return full metagenome metadata in matrix api
added kbase auth upgrade
header fix
fixed quoting
added 'permission' attribute to notebook metadata: view or edit
Merge pull request #241 from teharrison/develop

added 'permission' attribute to notebook metadata: view or edit
Merge pull request #242 from paczian/master

updated authentication for kbase
added migs verbosity type
Merge pull request #243 from paczian/master

added migs verbosity option to metagenome resource