adjustments after merge with noncode
adjust sampleheader

removed header
modified sampleConfig
Merge branch 'master' into trinity

Conflicts:
	conf/sample_header.sh
	core/prepareJobSubmission.sh
Merge branch 'master' into trinity
Merge branch 'master' into trinity

Conflicts:
	bin/trigger.sh
	core/jobSubmission.sh
	core/prepareJobSubmission.sh
first batch of updates to get trinity comply with new features
small changes
test commit
initial pipe test for inchworm
created NODE_TMP variable to avoid permission issues creating a non-standard TMP folder
testing armed/prep flags
updated trigger; problems creating dummy files
updated trigger; problems creating dummy files
updated trigger; problems creating dummy files
Merge branch 'master' into trinity
Trinity refactored
Merge branch 'master' into trinity
folder adjustments
perl version checking
local tmp folder usage