git-svn-id: http://www.nitrc.org/svn/shapeworks@1 bd4681a2-3e9a-0410-b5d1-a8caa14fa32b
First pass at isolating trimesh code. Removed trimesh and fim libraries (now a separate build). Reworked CMake files with mesh dependencies as an option.  Removed ICP from ShapeWorksGroom since it is dependent on VTK.

git-svn-id: http://www.nitrc.org/svn/shapeworks@2 bd4681a2-3e9a-0410-b5d1-a8caa14fa32b
Added the FindFIM code


git-svn-id: http://www.nitrc.org/svn/shapeworks@3 bd4681a2-3e9a-0410-b5d1-a8caa14fa32b
Some empty-line fixes and partial debug of the Procrustes bug

git-svn-id: http://www.nitrc.org/svn/shapeworks@4 bd4681a2-3e9a-0410-b5d1-a8caa14fa32b
Fixed ProcrustesAlign tool, which was using the Procustes3D class incorrectly

git-svn-id: http://www.nitrc.org/svn/shapeworks@5 bd4681a2-3e9a-0410-b5d1-a8caa14fa32b
Started a testing directory.  Added some procrustes test data.

git-svn-id: http://www.nitrc.org/svn/shapeworks@6 bd4681a2-3e9a-0410-b5d1-a8caa14fa32b
Cleaned up many warnings. Mostly signed unsigned comparisons.  Watch for repercussions from this.

git-svn-id: http://www.nitrc.org/svn/shapeworks@7 bd4681a2-3e9a-0410-b5d1-a8caa14fa32b
Removed all doublespace from itkParticleSystem header files. Cleaned up many many warnings regarding comparison of signed with unsigned.  Watch for repercussions...

git-svn-id: http://www.nitrc.org/svn/shapeworks@8 bd4681a2-3e9a-0410-b5d1-a8caa14fa32b
Removed spaces from ITParticleSystem txx files

git-svn-id: http://www.nitrc.org/svn/shapeworks@9 bd4681a2-3e9a-0410-b5d1-a8caa14fa32b
All double spacing should be removed from files now

git-svn-id: http://www.nitrc.org/svn/shapeworks@10 bd4681a2-3e9a-0410-b5d1-a8caa14fa32b
Removed shape_statistics class (replaced by ITKShapeStatistics)

git-svn-id: http://www.nitrc.org/svn/shapeworks@11 bd4681a2-3e9a-0410-b5d1-a8caa14fa32b
 

git-svn-id: http://www.nitrc.org/svn/shapeworks@12 bd4681a2-3e9a-0410-b5d1-a8caa14fa32b
 

git-svn-id: http://www.nitrc.org/svn/shapeworks@13 bd4681a2-3e9a-0410-b5d1-a8caa14fa32b
ENH: add the fix tempalte in shapeworksrun

git-svn-id: http://www.nitrc.org/svn/shapeworks@14 bd4681a2-3e9a-0410-b5d1-a8caa14fa32b
added param:Exception handling


git-svn-id: http://www.nitrc.org/svn/shapeworks@15 bd4681a2-3e9a-0410-b5d1-a8caa14fa32b
Xlibraries references added - Xinerama, Xft for non apple compilations

git-svn-id: http://www.nitrc.org/svn/shapeworks@16 bd4681a2-3e9a-0410-b5d1-a8caa14fa32b
minor changes to surface normal penalty code

git-svn-id: http://www.nitrc.org/svn/shapeworks@17 bd4681a2-3e9a-0410-b5d1-a8caa14fa32b
removed pre-computed surface normal derivatives from itkParticleImageDomainWithGradients.h

git-svn-id: http://www.nitrc.org/svn/shapeworks@18 bd4681a2-3e9a-0410-b5d1-a8caa14fa32b
Support to record the points info every checking point interval.

git-svn-id: http://www.nitrc.org/svn/shapeworks@19 bd4681a2-3e9a-0410-b5d1-a8caa14fa32b
fixed "wpts"

git-svn-id: http://www.nitrc.org/svn/shapeworks@20 bd4681a2-3e9a-0410-b5d1-a8caa14fa32b