added some style
added (sii) as argument to pep_evidences method in mzid_parser.rb
Merge branch 'style'

* style:
  added some style
  added padding to element p bc the sticky footer thing screws it up
  created a sticky footer that sticks to the bottom of the page
Merge branch 'mzid2dbthing'

* mzid2dbthing: (48 commits)
  added (sii) as argument to pep_evidences method in mzid_parser.rb
  Fragment parsing and saving seems to work ok. Tested with public/uploaded_mzid_files/examplefile.mzid. Also fixed some has and belongs to associations for sir. Also fixed sar controller and sar index view
  added sii.fragment parsing and saving
  changes to peptide_evidence and related models and their relations. Also added fragment parsing in spectrum_ident_results method
  changed the db schema, peptide are not related to sii anymore, sii are related through join table to peptide_evidences, and peptide and modifications are related to the peptide_evidence table. Also peptideEvidence parser in process
  migration to add peptide_id to peptides. Also changed the Peptide class(peptide parser) so it doesn't match the Peptide model. And shit
  migration to add peptide_id to peptides. Also changed the Peptide class(peptide parser) so it doesn't match the Peptide model. And shit
  added peptide parser thing to mzid_parser.rb and trying to make it save in mzid_2_db.rb
  added :null => false to some of the sii attributes/columns since they are required in <SpectrumIdentItem>. Run the migrations and shit
  changes to make the thing save the spectrum identification items. changed the model
  changes to sil and results and items parsing and saving
  progress in results and items parser in mzid_parser and saver in mzid_2_db.rb
  spectrum identification result, parser method in mzid_parser and saving in mzid_2_db.rb
  created spectrum_identification_results method and sir class in mzid_parser. Also started the saving thing in mzid_2_db
  save2tables in mzid_2_db.rb now saves ok to si, sip and sil
  moved fks spectrum_identification.spectrum_identification_protocol_id and spectrum_identification.spectrum_identification_list_id to spectrum_identification_protocol.spectrum_identification_id and spectrum_identification_list.spectrum_identification_id also modified mzid_parser and mzid_2_db throughout
  modifications in spectrum_identifications method si class and save2tables method
  spectrum_identifications method in mzid_parser.rb gives array of si objects y bla bla
  migrations and model associations for the new schema including the new table spectrum_identifications. Yehaa
  added some comments on how to deal with new model SpectrumIdentification if I change the db and add that table
  ...
added proteopathogen.mwb to public folder so it synchronizes and all
Merge branch 'mzid2dbthing' of https://github.com/vitalv/proteopathogen_on_rails

* 'mzid2dbthing' of https://github.com/vitalv/proteopathogen_on_rails:
  the modifications parsing thing didn't allow mzid files missing this data. NOw it does.
Merge remote-tracking branch 'origin/mzid2dbthing' into mzid2dbthing

* origin/mzid2dbthing:
  the modifications parsing thing didn't allow mzid files missing this data. NOw it does.
Merge branch 'master' into mzid2dbthing

* master:
  added proteopathogen.mwb to public folder so it synchronizes and all
  added some style