Correctly get 1-based roi
Updated `genome` tab completion.
New tool for parsing NetMHC3.2 stdout from web
Updated `genome` tab completion.
Updated `gmt` tab completion.
added test case for convert_file_with_alpha_gt_values_to_numeric
Merge branch 'master' into gb_master
SX: add complement function
added sanity checks to handle the case where no segs will be plot
SX: reader sorts seqs by name
SX: sam/bam reader complements seqs w/ reverse complemented flag
Merge branch 'master' of ssh://git/srv/git/genome
fix typo in error msg
SX: sam and bam reader test reads 2 from sam/bam
SX Result: reorged methods, updated status msgs
SX Result: move resolve_merged_input_type from SX result to merged result
SX Processor: change API to be able to return merged sx result params and all final sx result params
DeNovo: update process inst data to use sx processor api
DeNovo: pass in command class name to add operation in pp
DeNovo: update workflow to use new build steps