revert out changed to bam_depth steps - will add new ones with new names
new bam depth stats/plots steps and tests
vfp_filter_biallelic2 step
minor fixes
Merge branch 'master' of /nfs/team112_internal/production/repos/vr-pipe
indenting
change to use new biallelic filter
remove debug log
added an option to include the header in every split file.  Meant changing from dispatch to dispatch_wrapped_cmd
rework vfp stage2 to use Richard's implementation of the new hyperhet filtering
triallelic filter
tetra filter should work now
Merge branch 'master' of /nfs/team112_internal/production/repos/vr-pipe
initial pass at new hyperhet filter - probably needs vcf splitting first
Pipelines for Ag/Pv sample bam building
commits before merge