More support for ENCODE 2.  New option -23 reads TSV file with ENCODE2 accessions in dataset field and converts these to ENCODE 3
Merge branch 'master' into edwFile2
Add --quick option for app side (uses elastic search
Change replicate representation (allow replicate number 0) to use -1 for no rep.  Also allow additional EDW terms for no replicate (as per JK)
Add -R (require replicate), -f (find missing).  Implement -I (import-all, which is essential sync) and -n which use max_id at EDW
Add -R (require replicate), -f (find missing).  Implement -I (import-all, which is essential sync) and -n which use max_id at EDW
Perf improvements. Fixes to ENCODE 2 handling.
Merge branch 'master' into edwFile2
Fixes after testing compare
Fix mismatch on assembly (present at EDW but not in JSON for fastQs)
Another fix for missing assembly
Exclude sync of files with non-empty edwFile.errorMessage, as per JK instruction
Rework to avoid reliance on collection formatting.  Export from app works again.  Compare not yet.  Import tested.  Sync not yet.
Minor cleanup
Flip EDW sync to use max id from valid file table insstead of all file table (avoid losing slow files)
More adapting to missing assembly.  Change last_id to edwValidFile max id (not edwFile max id)
Merge pull request #38 from ENCODE-DCC/edwFile2

Edw file2