added note about emperor transition
updated workflows to use make_emperor.py rather than make_3d_plots.py
updated to work with emperor plots instead of king plots
updating to use emperor plots
updated to emperor pcoa plots
modified script interface for king to emperor transition
added comment on script interface changes
updating for king to emperor transition
updated for king to emperor transition
updating for king to emperor transition
updated for king to emperor transition
improved the message on the king to emperor transition
Initial commit of changes
Merge branch 'emperor-transition' of github.com:gregcaporaso/qiime into emperor_transition
added emperor to the install document
added deprecation warnings
updated deprecation warning text
Fixing tutorial and tutorial images, and sh files
Fixing Emperor version and Procrustes
Merge pull request #1154 from gregcaporaso/emperor-transition

Emperor transition