Restore files needed for gene annotation bacterial pipeline
Merge branch 'updated2' into gb_master
Bless gene-prediction-eukaryotic build
Merge branch 'updated2' into gb_master
cleanup
cleanup more
More tweak to make same gene in-frame fusion, bug fix, test update
make samtools mpileup vcf output TCGA compliant
Defer output of data directory until we have one. Use different message if inline.
update test data
Merge branch 'master' of ssh://git/srv/git/genome
fix ClinSeq WGS create mutation spectrum test