bug 22252 - make ConsensusCore C# wrapper build from a clean checkout --
IMPORTANT NOTE -- if you chage the SWIG bindings in such a way that the set of generated C# files changes - you must update the checked-in C# file list, and the csproj.
I'll put a README in src/SWIG to this affect.

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 122873]
fix build -- already had some interface change that needed to be fixed -- bug 22252

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 122874]
remove wildcard hacks from makefiles -- bug 22252

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 122877]
bug 22252 -- newly added csproj stub files must be +w in p4.

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 122890]
bug 22252 -- accidentally checked in generated file

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 122891]
bug 22252 -- add a note about how to update the C# binding to the README

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 122893]
Add a ReadScorer class for getting template-vs-read scores in testing/experimental code

(Not to be used in production code)

[Tracking bug 22690]

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 122896]
Beginnings of support for multi-base template mutation scoring

[Tracking bug 22690]

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 122897]
       Add empty stub file

       [Tracking bug 22690]

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 122898]
Fix jenkins build

[Tracking bug 22690]

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 122914]
Really fix the jenkins failure.  I think.

[Tracking bug 22690]

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 122923]
Fix the Python jenkins test

[Tracking bug 22690]

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 122940]
fix c# build -- bug 22690

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 122943]
Multibase template mutations are now full-fledged Mutation objects

Backwards-compatible APIs still available in Mutation, MutationScorer

Unit tests pass

[Tracking bug 22690]

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 122962]
Fix boundary condition in MultiReadMutationScorer

[Tracking bug 22690]

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 123006]
Inline trivial methods of Mutation class

[Tracking bug 22690]

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 123007]
Version 0.6.1

[Tracking bug 22690]

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 123008]
bug 23171 - move C# unit tests, to harmonize nunit version

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 123146]
fix build - bug 23171

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 123149]
Add a "BinomialSurvival" function to ConsensusCore

[Tracking bug 22690]

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 123163]