Debugging

Also took out try/catch for runGuas for better debugging. Hoping to be
more conservative with try/catch usage.
Fixing iterateAtom

runGaus still broken. Fixing iterateAtom in the mean time
Fixes newline, can run a gaus

GJF file making is fixed by replacing \n with char(10)
runGaus works (not with timeOut)
Starting to fix iterateAtom