Crazy amounts of refactoring. Still in progress but really needed to commit so I don't lose everything.
Some more work. Sorry for the lack of descriptive commits.
Narrowed an issue with these psuedo elements covering up links in the bottom of the previous note. Since the whole reason we puth this psuedo content there is so that hyperlinks aren't covered by the main menu; thus we can use :target to reduce when this bug will happen. I tried to find some way with z-index to do it but failed.
Purple-ized the header. Also made some small adjustments to colors and borders in general.
Function declarations now use box-shadows instead of borders. A few other adjustments as well.
Reimplemented basic search. Adjusted some margins and paddings.
Added the logo back! A few other minor adjustments as well.
Some adjustments to the search-box.
Improved coloring of class synopsis and function declarations.
Minor improvements for class synopsis.
Fixed some layout issues.
Merge branch 'master' into responsive

* master:
  fix HTML
  PHP 5.3.27 tarballs
  Hiding CHM builds for now. See bug #64842
Some more layout fixes.
Updates to bring Homepage colors and spacing in line with the rest of the site.
Right sidebar color updates.
Undoing some of my over-architecting from a couple years back. Also showing more items on the homepage.
Added option to site_header to allow a custom span(for twitter bootstrap). Calendar page needed this. Other minor updates.
Merge branch 'master' into responsive

* master:
  Removed empty section.
Merge branch 'master' into responsive

* master:
  Grammar and related fixes
  PHP 5.3.27
Updated beta-warning to actually work with the new fixed-header. A lot of header love in general, such as a cleaned-up logo and a better searchbox.