generate_sbatch.py. New flagg -s, to handel single end reads.
changed log path
updated acknowledgement text in project status note
Merge pull request #251 from b97pla/develop

updated acknowledgement text in project status note
Merge pull request #250 from mayabrandi/develop

generate_sbatch.py. New flagg -s, to handel single end reads.
added convenience method for runParameters.xml parsing
Merge branch 'develop' of github.com:SciLifeLab/scilifelab into develop
merge from develop