Task added to TODO
added hit_id to subject in blast_parser
Merge branch 'master' of ssh://gitolite@pb:2203/seq_crumbs
unused import removed
Merge branch 'master' of ssh://gitolite@proxybioinf.comav.upv.es:2203/seq_crumbs
minor pep8 fix
minor pep8 fixes
minor pep8 fixes
get_str_qualities implemented
get_qualities renamed as to get_int_qualities
title should not include the line break
half baked bulk duplicate filter implemented
TODO modified
Now format of each "file" is estored in a temporary dictionary. Format
is associated to the fhand, so it is not needed to pass through all
functions
Merge branch 'guess_format'
adapt bulk-filters to new fhand/format structure
update to todo
the output can be writen now also in fasta format
test for _seqitem_pairs_equal completed
filter duplicates implemented