Bio/DB/TFBS/transfac_pro.pm: Added a DESTROY method to remove
tied filehandles and allow proper deletion of temporary files
BioFetch.pm: Close first the filehandle and then test for a throw,
or the filehandle will remain open and block temporary file deletion
WebDBSeqI.pm: Close a filehandle from an object that
is not going to be used anymore, which was blocking file deletion
MeSH.pm: A possible format change in the html content broke
the parsing. The code was expecting just "<TD>" and found
"<TD colspan=1>", so changed the regex to be more flexible
(<TD(?: [^>]+)?>). Also added some cleanings to $desc
MeSH.t: Updated test to expect the current description of D012851
HTTPget.t: Fixed a "bareword not allowed" error
Consed.t: Removed the exclusion of Windows from the test file
since all tests pass fine
RemoteBlast.t: Increased a little the delay between retries
to connect to server (from 5 to 10 seconds), and fixed skip
tests number
hmmer.t: Fixed test that was using linux command "cat"
to use the equivalent command "type" in Windows
Changed "cat" to "find" to be used as an example of
an executable to be found in WBCommandExts.t,
CommandExts.pm and t/Tools/Run/Dummy/Config.pm.
The command "find" is preferred because it exists
both in linux and windows operating systems
Taxonomy/flatfile.pm: Added DESTROY method to remove filehandles
and delete temporal files
HIVQuery.t: Closed filehandle that was blocking deletion
of temporary file
core.t: Removed the additional file extension of a temporary file,
because the new file name was not registered for cleanup
like the old one, so it was not deleted on exit
maint: removed some tabs
maint: prepare for release (Carnë Draug)
Bio::Root::Build: fix bug on strict, barewords not allowed when using strict
maint: finalize preparation for release (Carnë Draug)
Fixed typo in POD
More tests(Florent Angly)
Put RootIO.t and Tempfile.t tests into IO.t since they all test Bio::Root::IO + some test updates