made output type default to input type for genotype aligner
genotype reader formats deterime type based on path
genotype reader formats deterime type based on path
Minor
Implemented automatching of file types.
bump version due to changes in commandline options
update readme
update readme of project
Update test
Merge pull request #135 from PatrickDeelen/master

Upgrades to genotype aligner
Merge branch 'master' of https://github.com/molgenis/systemsgenetics