Created and added arguments to parse and defaults as specified in the wiki for CONCOCT
added output class, reading in composition and coverage, generate features for composition
Added tests for all output files creation
Tests for creation of unique output directory if given exists
init file for concoct module
pca and first Gaussian mixture, not finished
first version, need to test
finished, untested
Merge branch 'argument_parsing'
fix output, and parameter error
removed percentage sign from pca
make more readable
Files do not pass
Pedantic 80 characters per line maximum edit
Restructured, kept concoct script as before
Suitable test data, finally
Some basic change in the test integration concoct bash call
Changed tests to use output dir as parameter
Assume log coverage input and fix join typo
Fixed mistakes in test_data