Started with a rough draft of a async algorithm visualizer using JGraphT as well as some package changes.

- Creation of a dcopthesis package with all new files.
- Some notes regarding future evaluations of algorithms
(Evaluation-Notes.txt @ root).
- Very early draft of visualizer.
Minor changes, adding of graph libraries.

Some other changes to get everything working with the new package
structure.
Adding of jgraph and jgrapht libraries (unmanaged).
Updated .gitignore
Again :)