Create preliminary man pages for 'IntervalForest' class and findOverlaps
add an %outside% that is the opposite of %over% (tried for a better
antonym but things like 'under' just didn't work)


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/IRanges@78270 bc3139a8-67e5-0310-9ffc-ced21a209358
export %outside%


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/IRanges@78271 bc3139a8-67e5-0310-9ffc-ced21a209358
fix one of those tricky longer-object-multiple-of-shorter-object
checks in DataFrame


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/IRanges@78278 bc3139a8-67e5-0310-9ffc-ced21a209358
fix showAsCell issue with arrays


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/IRanges@78280 bc3139a8-67e5-0310-9ffc-ced21a209358
fix subtle issue with the List abstraction from a month or so back


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/IRanges@78281 bc3139a8-67e5-0310-9ffc-ced21a209358
push up the matrix-style pretty-printing from GenomicRanges to IRanges


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/IRanges@78282 bc3139a8-67e5-0310-9ffc-ced21a209358
preliminary man page version for IntervalForest
Merge branch 'local-hedgehog'
fix up ifelse for when one or more of the arguments are Rle


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/IRanges@78299 bc3139a8-67e5-0310-9ffc-ced21a209358
fold 'findOverlaps,Ranges,IntervalForest-method' documentation to 'findOverlaps-methods.Rd'
remove 'findOverlaps,Ranges,IntervalForest-method' man page
IntervalForest documentation completed
Merge branch 'local-hedgehog'
Merge branch 'IntervalForestManPages'
version bump