vignettes use standard amsart document style instead of hacked jss style

git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/vegan/pkg/vegan@2562 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
copy jss.cls definitions of stats macros

git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/vegan/pkg/vegan@2563 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
betadiver(help=TRUE) lines wrap more nicely

git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/vegan/pkg/vegan@2564 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
vegan.sty works with amsart and article; smaller \code font

git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/vegan/pkg/vegan@2565 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
example font size depends on the number of columns in vignettes

git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/vegan/pkg/vegan@2566 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
new formatting of vignettes with standard article class, and diversity and decision in two columns

git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/vegan/pkg/vegan@2567 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
incomplete final line found by utils:::aspell

git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/vegan/pkg/vegan@2568 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
incomplete final line found

git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/vegan/pkg/vegan@2569 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
fixes after running utils:::aspell with filter='R'

git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/vegan/pkg/vegan@2570 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
fixes after running utils:::aspell with filter='Rd'

git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/vegan/pkg/vegan@2571 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
figure style depends automatically on the number of columns

git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/vegan/pkg/vegan@2572 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
code{} handles underscores, tildes and dollars

git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/vegan/pkg/vegan@2573 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
fix vegan.sty (order matters), edit decision for parallel processing

git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/vegan/pkg/vegan@2574 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
edit Rnw

git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/vegan/pkg/vegan@2575 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
add references to diversity

git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/vegan/pkg/vegan@2576 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
oecosimu can analyse models in batches to avoid memory exhaustion

git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/vegan/pkg/vegan@2577 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Veganify Szöcs's dispweight

We reuse vegan functions and vectorize everything. Now simulation
is made with simulate.nullmodel(..., "c0_ind"). This is now much
slower than the original code, because c0_ind is so slow (must
see if this can be fixed).
Further veganification of dispweight

- If this is a standardization function, it is expected to return
standardized data (plus attributes telling how this was done)
- let user set arguments instead of hard coded arbitrary choices
(nullmodel, critical p value)
Document dispweight2
replace indshuffle with much faster stats::rmultinom in make.commsim

git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/vegan/pkg/vegan@2578 edb9625f-4e0d-4859-8d74-9fd3b1da38cb