Remove Bloom paired aligner & hamming distance
Trying to work out bugs in the intersecting aligner
Merge branch 'MAPQ-matei' of https://github.com/amplab/snap into MAPQ-matei
-fast option, tinkering with paired end aligner
Merge branch 'MAPQ-matei' of https://github.com/amplab/snap into MAPQ-matei
fast paired end more, mode instrumentation, -B option
Merge with Ravi's changes
Merge branch 'MAPQ-matei' of https://github.com/amplab/snap into MAPQ-matei
0.16alpha.0: change paired end -h default to 2000, min spacing to 50