Fixing bug in main page: omitting mutations with read counts for reference allele = 0
merging branches
merging branches
new function: loadCosmic() = cosmic data as hash
merge branches
Change vep annotation output format (compatible with old routines)
new global constants for downloading files from SGI
collects coverage info according to base quality thresholds (0,15,20,30)
generalized phylogenetic tree search using phylip
merge branches
Merge branch 'master' of https://github.com/SMC1/JK1

Conflicts:
	modules/mygenome.pyc
	modules/mygsnap.pyc