New notes on ConfigIo and GroupStorage
Adding notes on GroupGhosts.
Removing AtomStorage::countGroupAtoms (unused)
Editing docs of Group(Exchanger & Storage)
Adding DdMd::LogEnergy() class.
Merge branch 'devel' of github.com:/dmorse/simpatico into devel
Working ddSim using AtomMap, with same algorithm.
Removed call-through funcs AtomStorage calls- AtomMap
Differenting findGroupAtoms for local and ghosts.
First with std::map for StorageMap ghosts. buggy.
Added std::map for ghosts to DdMd::AtomMap, tested.
Commiting changes with multimap.
Updating config.mk files in obj/
Merge branch 'master' into devel

Conflicts:
	src/ddMd/analyzers/OutputEnergy.cpp
Merge branch 'devel' into map
Removed old AtomMap::findGroups function.
Add shuffle ghost to atomPtrs_ to AtoMap::addLocal
Changing setup to copy configs from src/
Small change to run target in test maekfiles.
Removing configure scripts in obj directories.