Merge pull request #78 from Gerbenvandervries/master

allow max two mismatches between barcodes, and bugfix GAF barcodes.
Updates on in-house pipeline documentation in generated README.txt and QCReport.pdf
Merge pull request #79 from freerkvandijk/master

Updates on in-house pipeline documentation in generated README.txt and Q...
Added RNA-seq_genotype_calling pipeline compute5 style.
Small updates on rna-seq genotype calling pipeline protocols.
Merge pull request #80 from freerkvandijk/master

RNA-seq_genotype_calling pipeline compute5 style
removed parameter, which can be useful, but now it is blocker
Merge pull request #81 from georgebyelas/master

removed parameter, which can be useful, but now it is blocker
workflow changed according to compute5.1 specification and for running in the grid
Merge pull request #82 from georgebyelas/master

workflow changed according to compute5.1 specification and for running i...
fix path in worksheet
Merge pull request #83 from georgebyelas/master

fix path in worksheet
Impute2 small update
Merge pull request #85 from PatrickDeelen/master

Impute2 small update
Fix bug in worksheet test
Merge pull request #86 from PatrickDeelen/master

Fix bug in worksheet test
Output location for generated FinalReport changed.