Added text to vignette
Merge branch 'master' of github.com:RGLab/pepStat into postResub
man + vignette + RCC
beforeMerge
Merge branch 'postResub'

Conflicts:
	R/summarizePeptides.R
More changes.
Fixed the ordering of the peptide in the slidingMean function.
Edit argument checking of summarizePeptides to throw more informative
errors.
Major overhaul, need to test now.
Cleaned up the package and fixed a few bugs.
Merge branch 'devel' into devel-new

Conflicts:
	NAMESPACE
	R/NormalizeArray.R
	R/slidingMean.R
	R/summarizePeptides.R
Fix header manipulation in .sanitize.mapping.file
Fix function name error.
edit name of argument checking function
edit namespace to import "rbind" method from IRanges, required for
sliding mean function.
add "tolower" to grep of visit factor
Change "cat" to "message" (Bioconductor standard)
simplify function to compute left-tail subject-specific FDR estimates.
Merge branch 'devel-new'

Conflicts:
	R/slidingMean.R
	man/summarizePeptides.Rd
	src/symbols.rds
Add Rstudio project file to .gitignore