garnet modifications
Merge branch 'master' of github.com:erdc-cm/proteus
config changes on garnet
adding bathmetry-based mesh generation
fixed bathymetry mesh to ignore points outside polygon
fixed bug in FemTools use of old style lambda variable binding; added InterpolatedBathymetry domaind and mesh
working on optimized mesh read and partition for large meshes, this version works for c0p1 but something is wrong with c0p2
tried to fix edge partitioning from tetgen files. poisson c0p1 and c0p2 tests are running
cleaned up parallel partitioning and fixed bugin c0p2
modifed the linux config for petsc a little bit because superlu_dist is giving problems. also updated python pointer
Merge branch 'master' of github.com:erdc-cm/proteus
refactored partitionNodesFromTetgenFiles to try to reduce memory usage and duplication
made some fixes on diamond to pythonConfig and tests
added the python "patches" on diamond
Update README.rst

fixed spelling error in github url
added stampede config files
Merge branch 'master' of github.com:erdc-cm/proteus
Switched tetgen call to use subprocess.call and added code to save value of __cplusplus to reset it properly later.

Conflicts:

	proteusModule/include/flcbdfWrappersModule.h
Merge branch 'master' of github.com:erdc-cm/proteus
updated current garnet configuration test_proteus_garnet.pbs is running but not finished testing