Add link to Chimera; add a picture of the final fit.


git-svn-id: https://svn.salilab.org/imp/trunk@17124 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Get full version from Python.


git-svn-id: https://svn.salilab.org/imp/trunk@17125 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Add a more detailed example for FoXS, and test it.


git-svn-id: https://svn.salilab.org/imp/trunk@17126 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Update for new test.


git-svn-id: https://svn.salilab.org/imp/trunk@17127 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Fix typos and grammar; escape <>.


git-svn-id: https://svn.salilab.org/imp/trunk@17128 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Use HTML <img> tag rather than \image, since the latter prompts doxygen to
try to copy the png to the install directory, but because it's already
symlinked there, doxygen truncates the original copy in the repository to
0 bytes.


git-svn-id: https://svn.salilab.org/imp/trunk@17129 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Copy rather than symlink on platforms (Windows) that don't support symlinks.


git-svn-id: https://svn.salilab.org/imp/trunk@17130 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Handle result variable being non-numeric (if often is on Windows); give more
information about the command run and the error reported to aid in debugging.


git-svn-id: https://svn.salilab.org/imp/trunk@17131 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Make sure Python scripts are run with 'python' on Windows.


git-svn-id: https://svn.salilab.org/imp/trunk@17132 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
os does not have a 'copy' method; use shutil.


git-svn-id: https://svn.salilab.org/imp/trunk@17133 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Sort local include directories.


git-svn-id: https://svn.salilab.org/imp/trunk@17134 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Always use / path separators for cmake.


git-svn-id: https://svn.salilab.org/imp/trunk@17135 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Exclude some of the larger directories to reduce the amount of files that need
to be copied on Windows.


git-svn-id: https://svn.salilab.org/imp/trunk@17136 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Handle non-numeric exit status.


git-svn-id: https://svn.salilab.org/imp/trunk@17137 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Run setup_module explicitly with 'python' on Windows systems.


git-svn-id: https://svn.salilab.org/imp/trunk@17138 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Fix typo.


git-svn-id: https://svn.salilab.org/imp/trunk@17139 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Handle non-numeric exit from setup_application.


git-svn-id: https://svn.salilab.org/imp/trunk@17140 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Regenerate files.


git-svn-id: https://svn.salilab.org/imp/trunk@17141 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Make sure we use native path and directory separators when setting PATH,
so that things work on Windows.


git-svn-id: https://svn.salilab.org/imp/trunk@17142 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Don't forget compiled-in search path for examples and data.


git-svn-id: https://svn.salilab.org/imp/trunk@17143 e91f8c7b-0e32-4433-a9ac-4502d39a4eab