SVTYPE and SVLEN only written for small variants
Merge branch 'master' of github.com:StructuralVariants/manta
MANTA-31 workflow fails when no tumor bam file is provided
update cl
Adding SVLEN and END tags to vcf header
Adding vcf id also for non-translocation calls
MANTA-17 Adding rudimentary singleton/shaodow test
Fix for previous commit
add tabix-compressed vcf iterator from starka, and update build to link against tabix lib/include
Switching off debug output
add check for accidental DEBUG cpp defines, and a top-level pre-release code qc script
fix build error
Merge branch 'master' into MANTA-20-xchen

Conflicts:
	src/c++/lib/format/VcfWriterSV.cpp
	src/c++/lib/format/VcfWriterSV.hh