add MMPA code contributed by Jameed Hussain at GSK

git-svn-id: svn://svn.code.sf.net/p/rdkit/code/trunk@2354 a5045d30-4826-4484-9c7f-6e55a06ddc77
another swing at sf.net issue 279. This one is somewhat more efficient

git-svn-id: svn://svn.code.sf.net/p/rdkit/code/trunk@2355 a5045d30-4826-4484-9c7f-6e55a06ddc77
fix and test sf.net issue 280.

git-svn-id: svn://svn.code.sf.net/p/rdkit/code/trunk@2356 a5045d30-4826-4484-9c7f-6e55a06ddc77
Add Rogot Goldberg and AllBit similarity to C++ and the python wrapper.
(contribution from Sereina Riniker)


git-svn-id: svn://svn.code.sf.net/p/rdkit/code/trunk@2357 a5045d30-4826-4484-9c7f-6e55a06ddc77
Add support for merging recursive queries on the C++ side
(contribution from Sereina Riniker)

A pure Python version of this was in the tutorial material from the RDKit UGM.


git-svn-id: svn://svn.code.sf.net/p/rdkit/code/trunk@2358 a5045d30-4826-4484-9c7f-6e55a06ddc77
update from Jameed Hussain, including examples

git-svn-id: svn://svn.code.sf.net/p/rdkit/code/trunk@2359 a5045d30-4826-4484-9c7f-6e55a06ddc77
get the build working on the mac

git-svn-id: svn://svn.code.sf.net/p/rdkit/code/trunk@2360 a5045d30-4826-4484-9c7f-6e55a06ddc77
typo

git-svn-id: svn://svn.code.sf.net/p/rdkit/code/trunk@2361 a5045d30-4826-4484-9c7f-6e55a06ddc77
fix possible overflow

git-svn-id: svn://svn.code.sf.net/p/rdkit/code/trunk@2362 a5045d30-4826-4484-9c7f-6e55a06ddc77
get draw demo working when cairo is not installed

git-svn-id: svn://svn.code.sf.net/p/rdkit/code/trunk@2363 a5045d30-4826-4484-9c7f-6e55a06ddc77
continuation of cleanup from issue 279 [follow up from rev2355]

git-svn-id: svn://svn.code.sf.net/p/rdkit/code/trunk@2364 a5045d30-4826-4484-9c7f-6e55a06ddc77
add one more test for issue 275

git-svn-id: svn://svn.code.sf.net/p/rdkit/code/trunk@2365 a5045d30-4826-4484-9c7f-6e55a06ddc77
typo fix

git-svn-id: svn://svn.code.sf.net/p/rdkit/code/trunk@2366 a5045d30-4826-4484-9c7f-6e55a06ddc77
support the connectivity descriptors in the java wrapper

git-svn-id: svn://svn.code.sf.net/p/rdkit/code/trunk@2367 a5045d30-4826-4484-9c7f-6e55a06ddc77
support the connectivity descriptors in the java wrapper

git-svn-id: svn://svn.code.sf.net/p/rdkit/code/trunk@2368 a5045d30-4826-4484-9c7f-6e55a06ddc77
initial steps towards improved bfp indices in the cartridge

git-svn-id: svn://svn.code.sf.net/p/rdkit/code/trunk@2369 a5045d30-4826-4484-9c7f-6e55a06ddc77
make descriptor definition easier

git-svn-id: svn://svn.code.sf.net/p/rdkit/code/trunk@2370 a5045d30-4826-4484-9c7f-6e55a06ddc77
support connectivity descriptors in the cartridge

git-svn-id: svn://svn.code.sf.net/p/rdkit/code/trunk@2371 a5045d30-4826-4484-9c7f-6e55a06ddc77
initial fix and test for issue 281;
this introduces some new shift/reduce warnings, so it is probably worth looking through
the parse in some detail again at some point to make sure there are not any hidden problems.

git-svn-id: svn://svn.code.sf.net/p/rdkit/code/trunk@2372 a5045d30-4826-4484-9c7f-6e55a06ddc77
additional help for sf.net issue 275

git-svn-id: svn://svn.code.sf.net/p/rdkit/code/trunk@2373 a5045d30-4826-4484-9c7f-6e55a06ddc77