Implement intial methods for create-submission-archive
Parser for metainformation lines in vcf headers
Store flags specially
Fix bug with perl_quotelike
Allow arbitrary strings
Allow almost everything in regular strings
Vcf Header parses arbitrary metainfo lines
Add sample barcode and uuid to row
Use undef instead of fancy string
Cleanup from travis
Use a string object so we can preserve quoting
Add some more columns to the vcf row
Add a couple hard-coded values
Add some more required sdrf columns
Hard-code capture reagent info
Pass in cghub ids for builds
Take SomVar models as inputs
Look up CGHub based on bam file
Use somatic variation vcfs rather than refalign
Add option to load cghub id by tcga-name rather than just bam file