removed the no-spring html code out of the freemarker templates
added java changes + ngs ftl changes
deleted non spring code protocolviewer
removed comments
Merge pull request #753 from RoanKanninga/master

removed the no-spring html code out of the freemarker templates
Fix NGS app
Merge pull request #754 from dennishendriksen/master

Fix NGS app
Merging ngs app