allowed multiple fastq directories
added multiplex qc checks
merge conflicts
handle multiple unaligned directories in run folder
Merge pull request #150 from percyfal/develop

Develop - minor fixes and updates
multiple unaligned dirs for pipeline and google reporting
merge conflicts
removed hardcoded qos flag
Merge pull request #153 from b97pla/hotfix/fix_qos_flag

removed hardcoded qos flag
Merge pull request #152 from b97pla/feature/multiplex_qc

Feature/multiplex qc
Modify sample_run_metrics lookup
Merge branch 'hotfix/fix_sample_run_metrics_bug' into develop