Added acronym

Signed-off-by: Thomas Hodgson <thomas.hodgson@gmail.com>
Removed unnecessary packages, set options for todonotes.sty

Signed-off-by: Thomas Hodgson <thomas.hodgson@gmail.com>
Updated paper template

Signed-off-by: Thomas Hodgson <thomas.hodgson@gmail.com>
Updated MMD templates

Signed-off-by: Thomas Hodgson <thomas.hodgson@gmail.com>