Merge branch 'develop' of https://github.com/stan-dev/stan into develop
Merge branch 'develop' of https://github.com/stan-dev/stan into develop
Reorganize command output; clean up diagnose as side effect
Merge branch 'develop' of https://github.com/stan-dev/stan into develop
Distinct parameter names
Update docs
Update argument_config test
fully qualifying stan::gm::sample. This fixes the issue with g++ 4.4
Fixed command test
updated generator to include real param version with Eigen vec and no discrete, with tests
Merge pull request #442 from stan-dev/feature/issue-375-g++-4.4

Fixes #375.
Updated command_test to kill compiler and parser errors
added Eigen vector version of write_csv and transform_inits
added write_csv method for Eigen vectors w/o int params, plus tests
Tweak doc
Merge pull request #441 from stan-dev/feature/reorganize_command_output

Feature/reorganize command output
adding *.cpp for compiled models
removed compiler warning from generator_test.cpp
Merge pull request #444 from stan-dev/feature/issue-440-log-prob-for-eigen

Fixes #440.
Merge branch 'develop' into feature/issue-443-reorganize-agrad

cessary,