I'm a little confused by this comment.  You mean:

```scala
val applicationConf: Seq[File] = (PathFinder(basedir) ** "conf" * "application.conf").get
```

or something including resource directories:

```scala
val applicationConf: Seq[File] = (((base ** "conf") +++ (base ** "resources")) * "application.conf").get
```

Not 100% sure where you were going with this.