Add batch job submission script

Very messy right now and specific to job submission on Minerva.
Fix a couple of bugs
Add job submission status output
Move old stuff into old-results folder
Move code into fresco directory
Start fixing broken imports
Rename fresco.py and submit_fresco_jobs.py

Necessary to get imports to work...
Fix remaining broken imports
Fix fresco name in submit-fresco-jobs
Merge branch 'master' into issue-14

Conflicts:
	fresco/command_line_wrapper.py
Merge pull request #22 from jrrideout/issue-14

Added batch processing script and reorganized repo.