Added first vector space prototype.
First prototype of the algorithm class using a vector space.
First attempt at creating a variant graph from a vector space.
Made more use cases work with the vector space based collation
algorithm.
Refactoring in preparation of the move from a 2d vector space to a 3d
vector space.
Made building a 3d vector space from matches between 3 witnesses work
(preliminary implementation) and made the first unit test for 3
witnesses succeed.
Removed duplication between legacy methods of the 2d vector space
implementation and the new methods for 3d vectors. Added extra unit test
for the construction of a VG from the vector space.
Improved alignment in case of partially overlapping vectors. Moved test
for creation of VG from VS to a separate testsuite.
Implemented basic transposition detection in 3d vector space prototype.
First steps for merging in the third witness.
Vector space algorithm: transposition handling improvements.
Started work on a vectorspace -> variant graph builder.
Re-enabled transposition detection in vector space -> variant graph
build method.
More work to make vectorspace -> variant graph creation work with 3
witnesses.
Make DekkerVectorSpace algorithm temporary the default in the
SimpleCollation.
Extracted TokenVectorSpace class.
Fixed creation of Variant Graph from vector space when vectors where spanning three witnesses.
Made merging of vectors work in a 3D vector space.
3D VS: introduced getNonConflictingVector method
3D vectorspace aligner: implemented handling of repeated tokens.