Changed groupID and  artifactID, renamed java packages accordingly, bumped the version (moved files around)
follow-up to the previous changeset
modified project configuration and dependencies; TODO: debug…
also, removed a deprecated method.
This ver. compiles but fails to run in Cy 3.0.1.
updated to paxtools v4.2.0
Made it work in Cy3 again (fixed dependencies/embeding); continue updating UI, etc…
Updated (in fact, re-factored) to use the latest cpath2 client (and POST requests). Fixed problems with links in the bottom (details) panel, etc…
Fixed node attributes when created from SIF formatted query results; moved filter options to the Options panel/tab;  etc.
Hide the organisms filter options for now (always 9606 Homo sapiens is used - all queries)
Fixed the app/bundle name.
Bumped to 0.2.1-SNAPSHOT and made several fixes, such as: alerts are now displayed in a modal dialog (for some error or no result cases); cpath2 server URL can be set via the cytoscape3.props; tuned the filters panel; etc.
Removed the old class. Updated TODOs and comments.
Will use new default server URL (http://www.pathwaycommons.org/pc2/ - one can change it by editing ~/CytoscapeConfiguration/cytoscape3.props); also, updated the cpath-client dependency (to the latest snapshot); also, tried to optimize use of ws calls, etc.
Fixed issue #4 : created menu items and actions under Apps->CyPath2. Polished the UI (alignment, resize) and POM (dependencies).
Bumped to v0.4 and began adding node context menu (+ some int. refactoring)…
Fixed JAXB related bugs (mostly in app's dependencies); Also, modified the search hits summary/details panel (bottom-right) and made the app send not too many requests to the server (it does not send hundreds queries in advance anymore...)
Polished the text in the Filter Options. Released as v0.4.1.