ImportProcess: return the name of the current file

...not the name of the file that was initially passed to the reader.  In
the vast majority of cases, the two files are equal.  However, when
reading from OMERO, it is very important to use the name of the current
file as the name of the initial file will contain the user's login
credentials.

Closes #9440.
(cherry picked from commit 63b95adad4018f1bd04735d9ce3d961c7192f508)
Update version numbers to 4.4.2
Merge tag 'v4.4.4' into dev_4_4

Release version 4.4.4

Conflicts:
	ant/common.xml
	components/autogen/pom.xml
	components/bio-formats/build.properties
	components/bio-formats/pom.xml
	components/common/build.properties
	components/common/pom.xml
	components/forks/jai/pom.xml
	components/forks/mdbtools/pom.xml
	components/forks/poi/pom.xml
	components/legacy/ome-editor/pom.xml
	components/legacy/ome-notes/pom.xml
	components/loci-plugins/build.properties
	components/loci-plugins/pom.xml
	components/loci-plugins/src/loci/plugins/in/ImportProcess.java
	components/loci-tools/pom.xml
	components/metakit/build.properties
	components/metakit/pom.xml
	components/native/benchmark/pom.xml
	components/native/bf-itk-jace/pom.xml
	components/native/bf-itk-jni/pom.xml
	components/native/bf-itk-pipe/pom.xml
	components/native/pom.xml
	components/ome-io/build.properties
	components/ome-io/pom.xml
	components/ome-plugins/build.properties
	components/ome-plugins/pom.xml
	components/ome-tools/pom.xml
	components/ome-xml/build.properties
	components/ome-xml/pom.xml
	components/scifio/build.properties
	components/scifio/cppwrap/minimum_writer.cpp
	components/scifio/cppwrap/showinf.cpp
	components/scifio/pom.xml
	components/scifio/src/loci/formats/FormatTools.java
	components/stubs/lwf-stubs/pom.xml
	components/test-suite/pom.xml
	pom.xml
Revert "Update version numbers to 4.4.4"

This reverts commit d4517f97bd2b463f75637f0d0198f3fb5fb4d9ca.
Added missing logging jars to loci-plugins

Updated the loci-plugins build.properties with necessary logging jars.
Specified surefire plugin configuration in scifio

The SCIFIO pom.xml now specifies its surefire plugin configuration,
specifically the testng.xml to use. This ensures the missing library
tests will all pass in the maven tests.
Moved sixteenbitlossless to bottom of testng.xml

The potentially troublesome 16bitlossslessjpeg2000 test was moved to the
bottom of the testng.xml, to attempt to ensure it will be run last (as
it may cause memory fragmentation).

Note that this will be accomplished when running the tests directly via
testng. However, ant and maven seem to order their tests differently, on
the principle that unit tests should be independent (which technically
the tests themselves are. The ordering being exclusively due to memory
issues).
Updated scijava to v1.19

The top-level pom.xml now references SciJava 1.19
Bio-Formats pom depends on NetCDF 4.0.03

Changed the Bio-Formats component to depend on NetCDF 4.0.03, which is
the same as included in the /jar folder for use with ant.

This was necessary to remove testing failures when testing with Maven,
due to changes in NetCDF post-4.0.03.

However note that the 4.0.03 jar is hosted in the imagej repository and
its pom is specifically tailored to this project, and should not be used
beyond the transitive dependency via Bio-Formats.

See #8797
Updated cppwrap to version 1.1.1

Updated the references to cppwrap (which includes jar2lib) to 1.1.1 to
take advantage of an updated jace linking path (which includes system
boost) and licensing.
Updating links in plone menu and main index
Import Bio-Formats content from loci site

- convert HTML into rst using pandoc
- strip headers and footers
Add LOCI documentation titles to index
Fix images in Bio-Formats table description
Remove pages not relevant to Bio-Formats
Remove extra line separators
Review individual format pages

- Fix headings
- Replace links to source files using extlinks
Remove sample pages
Fix compilation warnings in individual format pages
Remove extra line separators