Reenabled output of energy of bonded interactions.
Fixed permissions in dyna14 source code.
Removed stale PME C++ code.  This is part of an ongoing effort to get rid of compiler warnings.
Progress towards reenabling torsion constraints for DIM.
Further amendments.
Merge branch 'bug-fix-torsions'
Merge branch 'master' of github.com:jmbr/moil
Removed stale debugging code.
Merge branch 'master' of github.com:jmbr/moil
New function: WriteLogf. No need to call sprintf and then WriteLog from now on.
Merge branch 'master' of https://github.com/jmbr/moil
Merge branch 'master' of https://github.com/jmbr/moil
Wrote program to do basic automated checks on the new output. Added reference values and admissible tolerances for 1IHF on CPU.