First Commit

Need to re-arrange files a bit though.
Added a longer explanation with some links to the document.
Clarifed a sentence.
Commiting JS before messing it back up...
Refactor JS a little.
Should fix double left nav.
Affix isn't working.  Commenting out.
Rearranging repository to make rebasing and creating the github page branch easier to manage.
Ignore ds_store
Renamed markdown file & added github buttons.