more updated in prep for rewrite
more file renaming
add concat to nexus and phylip to cli
fix typo (phylip => NEXUS)
Add code to covert one alignment to another to cli.
Move convert one alignment to another up in cli.
Adding taxon extraction option to align cli.
Add pluck code to cli.
Rename extract to "pull".
Clarify pull/pluck differences in descr.
Make plucking parallel.
Add stdout dot for processing.
Add more info to descr.
Added sifting code to align cli.
Add fasta to misc cli.
Add fastq code to misc cli.
adding first shot at requirements.txt