Support defined order of the genomes. Make gene names more visible.
Merge branch 'gb-backport' into data_beta
Fix cna parser initialization.
Improve help text.
Support for gene annotations in gtf format (slow gene search). Add
commnad line interface to TsvSorter.
Updated DEXSeq tool.
Replicates required for DEXSeq.
BAM sorted by name for paired end data.
Need for replicates added to DEXSeq manual.
DEXSeq changes.
Changes to DEXSeq.
DEXSeq manual updated.
DEXSeq changes.
Changed DEXSeq manual file name.
Dispersion plot added to DEXSeq.
release 2.7.1
Set Picard validation stringency to silent.
Merge branch 'master' of https://github.com/chipster/chipster.git
Merge branch 'master' into gb-backport

Conflicts:
	src/main/java/fi/csc/microarray/client/visualisation/methods/gbrowser/dataSource/SAMDataSource.java
	src/main/resources/build.number
	src/main/resources/version.number
Merge branch 'gb-backport' into data_beta

Conflicts:
	src/main/resources/version.number