Merge pull request #3 from bneron/master

mobyle conform
opening msg if fail on all alignments + start html
minor bug correction
INSTALL ignore
html output and fstream opening checks
html output updated
Merge branch 'master' of github.com:hrouault/Imogene
Changed annotextent in eutherian to 100kb. Now display distance to
nearest TSS.

 On branch master
 Changes to be committed:
   (use "git reset HEAD <file>..." to unstage)

	modified:   src/motif.cpp
	modified:   src/motif.hpp
	modified:   src/scangen.cpp

 Untracked files:
   (use "git add <file>..." to include in what will be committed)

	css/
	examples/scangen/
mobyle related files are now optinally compiled
Merge branch 'master' of github.com:hrouault/Imogene
ACGT convention operational.

 Changes to be committed:
   (use "git reset HEAD <file>..." to unstage)

	modified:   examples/display/motifs.txt
	modified:   examples/genmot/align/test.fa
	modified:   src/display.cpp
	modified:   src/genmot.cpp
	modified:   src/motif.cpp
	modified:   src/sequence.cpp
	modified:   src/tree.cpp
imogene.xml update
Merge branch 'master' of github.com:hrouault/Imogene
configure bug
display scangen results as an html page
github web page init
gh-pages delete old files
Merge branch 'master' of https://github.com/hrouault/Imogene

Conflicts:
	INSTALL
index added
Added a branch test.