adding vbm8 segment/normalization for cleaner tissues classes
fixes, should be mostly working now
fix label output file
add vbm segment to __init__
fixing range inputs
fixing range inputs
fixes
Merge branch 'master' into enh/vbm

* master: (28 commits)
  fixed applymask output
  fixed test
  Fixed some details for the PR #530
  Removed accidentally added files (#530)
  Updated changelog
  Updated dMRI and fMRI pre-processing
  Added motion correction pipeline
  Modified FSL FLIRT interface to provide log support
  Polished code
  buildtemplateparallel.sh - issue with input files
  Update legacy.py - buildtemplateparallel.sh
  Minor fixes
  Added MBIS to sub-package configuration list
  Standardized import to add all utilities at once
  First implementation for MBIS
  New EPI dewarp workflow (#525)
  New EPI dewarping using a workflow
  api: force users to explicitly define whether to sort files
  BF: Fix SplitNifti to generate unique filenames for outputs.
  added mask input for bias field correction
  ...
pep8
fix indentation
add doc and example
add doc and example
Merge branch 'master' into enh/vbm

* master: (21 commits)
  Fixed error in _rotate_bvec that was adding an extra entry to the output rotated_bvecs file and offsetting the correction by one volume.
  add Bandpass to init
  homogenize name function accross interfaces
  fixing for new gen_filename autopep8
  autopep8
  few interfaces added, pep8
  add min version for bbr options
  pep8
  doctest
  Modified create_dmri_preprocessing to allow for pipeline use with and without fieldmap files  - Added use_fieldmap flag to create_dmri_preprocessing
  fixes
  inverse deformation field
  typo
  adding fsl6 options (bbr)
  fixing ApplyInverseDeformationOutputSpec bug
  Revert "simplify in_file"
  simplify in_file
  merge
  mock changes
  trailing comma fix
  ...
Merge branch 'master' into enh/vbm

* master: (24 commits)
  Doctests fix
  Fixed tests.
  in fact masking wasn't working, HistogramRegistration takes mask as numpy not nibabel
  allow similarity computation without mask
  Added [xor] metadata to afni.AutoTcorrelate
  added mask_source option to afni.AutoTcorrelate
  added mask_source option to afni.AutoTcorrelate
  fix fugue for not necessarly wanted output
  fix forward_warping input
  add Complex to __init__.py
  fix Complex doc
  fslcomplex interface + fix line removed inadvertently
  adding doctest to sigloss
  typo
  fixing abspath bug
  bugfix abspath
  added SigLoss to __init__
  added fsl sigloss to utils
  allow FUGUE to run without in_file
  allow FUGUE to run without in_file
  ...
try to fix dartel_template format bug
try to fix dartel_template format bug
fixed docs
changelog
Merge branch 'enh/vbm'

Conflicts:
	CHANGES