Linux port - Fix executable mode issue: chmod +x *.m.
No change to the code.
implement the new optimization method given from Shiva, also made isbonded based on the zmatrix, lastly made the cost based on errJac
parallelHF.m is not deprecated
Merge branch 'master' of https://github.com/gotteric/master_MSQC
Got mdminimization working, however not sure if the error that is feeded into the algorithm is in the right format
moved mdmini to MSQCApps. Did minor changes to errJac.m but changed it back to normal.
Merge branch 'master' of https://github.com/gotteric/master_MSQC into mdmini
initialized pars to empty matrices in zmatrix constructor
Merge branch 'master' of https://github.com/gotteric/master_MSQC
FragmentCached class reduces size of HL data files
added isBonded to Zmatrix, added FN to gen basis
updated setCostVector
took github version of setcostvector
Fix backwards compatibility issue in ZOpt.m
added extra return to template file
Merge branch 'master' of github.com:gotteric/master_MSQC
Add nelecc, nbasisc and Eorbc to FragmentCached
Fix multithread problem
Fix linux compatibility
Update .gitignore
added output of convergence data