Added ploidy calling to Haloplex pipeline.
Added new variantannotator
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Updates on haloplex pipeline.
shapeit phasing logging
Merge pull request #58 from DashaZhernakova/master

Added RNA-seq genotype calling pipeline
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Bug fix star mapper
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
RNA-seq pipelines uddates
Merge pull request #59 from PatrickDeelen/master

RNA-seq pipelines udates
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Small bugfixes in Haloplex pipeline + updates.
Merge pull request #60 from freerkvandijk/master

Bugfixes in haloplex pipeline
Added alloutputs exsist and return code check to star mapper
bug  fix star mapper
bug fix star mapper + echo's
RNA-seq flux capacitor
RNA seq genotype calling
small bug flux