fixed unit tests (bandaid fix) added unit test stubs for functions and classes that mike made
refactored SmoothingSplines class to get in shape for testing
continuted fixing SmoothedSpline, added tests
fixed logging bug, added basic test for fitting the loss function
got all but the transcriptome filter unit tests working, those fail due to the spline fitting being more relaxed than before
fixed fitpack warning appearing randomly, now is logged
merged visualization code
some change with setup
Merge branch 'dev' of github.com:YeoLab/clipper into dev
added more descriptive type errors for the c extension function
added in bed file reader instead of AS structure
Merge branch 'dev' of github.com:YeoLab/clipper into dev
inclded some extra data so I could analize peak distribution
made some unknown changes
Merge branch 'dev' of github.com:YeoLab/clipper into dev
added in error logging for fitting failaures?
Merge branch 'dev' of github.com:YeoLab/clipper into dev
modified setup (removed dependency, and fixed call peak a bit
fixed plotting
merge with dev