Compare 2 trityper datasets script
Merge pull request #53 from PatrickDeelen/master

Compare 2 trityper datasets script
Merge branch 'master' of https://github.com/molgenis/systemsgenetics.git
added to pom build of jar with all dependencies
fix build without dependencies
Fix + testing sample filter
Merge pull request #54 from PatrickDeelen/master

Fix + testing sample filter + pom updates
Merge branch 'master' of https://github.com/molgenis/systemsgenetics.git
Some minor fixes to ImputeToTriTyperConverterV2
Bit more testing sample filter
Some more minor fixes to ImputeToTriTyperConverterV2
Add VCF to TriTyper to ImputationTool console commands
Remove file that should not be in repo
Update .gitignore
Merge branch 'master' of https://github.com/molgenis/systemsgenetics
Throw IllegalStateException when QTL mapping did not yield any results.
Prevent tri-allelic SNPs from being tested in QTL mapper
Update sample filter methods
Update sample filter methods of trityper genotype data
Update autoloader with variant filter and sample filter