Reinstated rn2's code for importing multiplexed files.
Change time parameter to runtime to avoid name clash
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop
added wrapper method for picard's SamToFastq and Utils::Sam method which will do bam and fastq checks
Merge branch 'multiplex' of http://github.com/sanger-pathogens/vr-codebase into develop
Allow differing read lengths
Allow overriding of the default main-bulk inserts parameter
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop
added minimal required CPAN modules for making bas files
New SNPINDUSE section
Merge branch 'develop' into feature/exomeQC
Major revision of vcf-stats
Major revision of vcf-stats
Added back mistakenly deleted line
More filtering options
bug fixes for stats and graphs dying with undef values in array
Merge branch 'develop' into feature/exomeQC
Do not warn about duplicate lines unless told so
bug fix for writing target/bait bases to database
replaced sym-link to script with the actual script