Minor changes
Minor changes
Updated simulation code and High res image reading
Minor changes
"#   (use ""git reset HEAD <file>..."" to unstage)"
"#	deleted:    Beta/L1_Homotopy/README.txt"
"#	deleted:    Beta/L1_Homotopy/a_matrices/microtubules_Amat.mat"
"#	deleted:    Beta/L1_Homotopy/a_matrices/microtubules_Amat.npy"
"#	deleted:    Beta/L1_Homotopy/a_matrices/simulation_Amat.mat"
"#	deleted:    Beta/L1_Homotopy/a_matrices/simulation_Amat.npy"
"#	deleted:    Beta/L1_Homotopy/cs_analysis.py"
"#	deleted:    Beta/L1_Homotopy/homotopy.c"
"#	deleted:    Beta/L1_Homotopy/homotopy.dll"
"#	deleted:    Beta/L1_Homotopy/homotopy.h"
"#	deleted:    Beta/L1_Homotopy/homotopy.o"
"#	deleted:    Beta/L1_Homotopy/homotopy_c.py"
"#	deleted:    Beta/L1_Homotopy/homotopy_imagea.c"
"#	deleted:    Beta/L1_Homotopy/homotopy_imagea.dll"
"#	deleted:    Beta/L1_Homotopy/homotopy_imagea.h"
"#	deleted:    Beta/L1_Homotopy/homotopy_imagea.o"
"#	deleted:    Beta/L1_Homotopy/homotopy_imagea_c.py"
"#	deleted:    Beta/L1_Homotopy/homotopy_psf.py"
"#	deleted:    Beta/L1_Homotopy/libblas.dll"
"#	deleted:    Beta/L1_Homotopy/libblas.lib"
"#	deleted:    Beta/L1_Homotopy/libgcc_s_sjlj-1.dll"
"#	deleted:    Beta/L1_Homotopy/libgfortran-3.dll"
"#	deleted:    Beta/L1_Homotopy/libkdtree.dll"
"#	deleted:    Beta/L1_Homotopy/liblapack.dll"
"#	deleted:    Beta/L1_Homotopy/liblapack.lib"
"#	deleted:    Beta/L1_Homotopy/libquadmath-0.dll"
"#	deleted:    Beta/L1_Homotopy/library/__init__.py"
"#	deleted:    Beta/L1_Homotopy/library/datareader.py"
"#	deleted:    Beta/L1_Homotopy/library/daxwriter.py"
"#	deleted:    Beta/L1_Homotopy/library/i3dtype.py"
"#	deleted:    Beta/L1_Homotopy/library/parameters.py"
"#	deleted:    Beta/L1_Homotopy/library/readhres.py"
"#	deleted:    Beta/L1_Homotopy/library/readinsight3.py"
"#	deleted:    Beta/L1_Homotopy/library/writeinsight3.py"
"#	deleted:    Beta/L1_Homotopy/matlab/ReadHighResImage.m"
"#	deleted:    Beta/L1_Homotopy/matlab/ReadXMLParameters.m"
"#	deleted:    Beta/L1_Homotopy/microtubules.bin"
"#	deleted:    Beta/L1_Homotopy/microtubules.hres"
"#	deleted:    Beta/L1_Homotopy/setup_A_matrix.py"
"#	deleted:    Beta/L1_Homotopy/test_data/Figure_1_Simulated_Data/sim_movie_numEmit_9000_0001.dax"
"#	deleted:    Beta/L1_Homotopy/test_data/Figure_1_Simulated_Data/sim_movie_numEmit_9000_0001.inf"
"#	deleted:    Beta/L1_Homotopy/test_data/Figure_1_Simulated_Data/sim_movie_numEmit_9000_CVX.hrf"
"#	deleted:    Beta/L1_Homotopy/test_data/microtubules.dax"
"#	deleted:    Beta/L1_Homotopy/test_data/microtubules.inf"
"#	deleted:    Beta/L1_Homotopy/xml/cs_microtubules.xml"
"#	deleted:    Beta/L1_Homotopy/xml/cs_simulated.xml"
"#	modified:   README.md"
Adding functionality for comparing Mlists
"#   (use ""git reset HEAD <file>..."" to unstage)"
"#	new file:   Functions/Simulation/CompareReconstructions.m"
UpdateCompareReconstructions
Merging Jeff