Removed a duplicated statement
More code beautification
Updates to HT mode
Updates again, removing un-needed internal functions, adding comments
Restructured
More updates, shorter ore understandable code, fixed a HUGE bug in parental simulation
More cleaning, seems a lot of else cases are forgotten... see TODO:
Again removing 7 line of duplication (with a BUG)
Removing code duplication, and logic errors
Removed non-sense and just plain wrong if{}else{} blocks
Removed non-sense and just plain wrong if{}else{} blocks
cleaned up assignLinkageGroups a bit, removed expendable function