issue #672 fixed
Make end of run dialog ask about project file
dogfooding
issue #680 fixed
issue #695 fixed handling of legacy masking objects
Make close all use window.close() to give windows a chance to hide instead of destroy
issue #695 pad with NaN
Can't unlink temporary files because they are referenced as temporary files in analysis.py
issue #682 exception fixed
issue #682 UI bug fixed
sorry
makefiles and shortcuts fixed
Merge branch 'master' of https://github.com/CellProfiler/CellProfiler

Because git told me to?
added MAVEN_OPTS variable
issue #694 should be largely useable
Merge branch 'master' of github.com:CellProfiler/CellProfiler
issue #691 fixed
issue 692 fixed
issue #684 fixed
fix the build - but needs a test of post_run_display