testing commit on new branch
testing commit again
removed code dealing with priors and posterios
now processing one locus at a time
got rid of tab file
working onr eading multiple samples
comitting so ic an switch brnaches. THIS COMMTI DOES NOT COMPILE
multi-sample calling is working
multi sample calling
added back option to process a single chromosome at a time
multi sample calling keep bam files open
added multi sample qual score. QUAL = -10log10(P), where P is prob. all samples are homozygous reference
made read groups more flexible for allelotyper. look for sample. if not, assume rgid is the sample
changed vcfwriter test suite to reflect new constructor for vcfwriter
fixing conflicts, merging multi-sample-calling
Merge pull request #4 from mgymrek/multi-sample-calling

Multi sample calling