record any Counters from the pregelix job as part of STATS
Add a script to generate timing from log
Remove client in pregel
Rename folder name
Delete VertexUtil
add cmdline option `-runAllStats` to insert STATS between all jobs
Remove old message flag
Merge branch 'genomix/fullstack_genomix' into anbangx/clean-code

Conflicts:
	genomix/genomix-pregelix/src/main/java/edu/uci/ics/genomix/pregelix/operator/bubblemerge/ComplexBubbleMergeVertex.java
	genomix/genomix-pregelix/src/main/java/edu/uci/ics/genomix/pregelix/operator/splitrepeat/SplitRepeatVertex.java
	genomix/genomix-pregelix/src/main/java/edu/uci/ics/genomix/pregelix/testhelper/BridgeAddVertex.java
	genomix/genomix-pregelix/src/main/java/edu/uci/ics/genomix/pregelix/testhelper/BubbleAddVertex.java
	genomix/genomix-pregelix/src/main/java/edu/uci/ics/genomix/pregelix/type/MessageFlag.java
Keep copyBinAndTextToLocal
Merge branch 'genomix/fullstack_genomix' into anbangx/clean-code
Remove some useless code
Reorganize genomix-data
Reorganize genomix-driver
Reorganize genomix-hadoop
Reorganize genomix-pregel
remove ray dependence on old scaffolding aggregator
bugfix for P4: newEdge unused and outgoingMsg not properly reset for updates
Merge branch 'genomix/fullstack_genomix' into anbangx/clean-code
Merge pull request #83 from uci-cbcl/anbangx/clean-code

Anbangx/clean code
Merge remote-tracking branch 'origin/genomix/fullstack_genomix' into wbiesing/bugfix-for-p4

Conflicts:
	genomix/genomix-pregelix/src/main/java/edu/uci/ics/genomix/pregelix/operator/scaffolding/RayVertex.java