Start process of adding mhd.
Move wrappers out of program files.
creat wrapper and skeleton for mhd source term.
move some memory alloc to relevant problem
move timings information for flusi to subroutine.
More wrappers for mhd/fsi code.
Add wrappers and skeleton for fsi and mhd code.  Fsi code back in working order.
minor comments
minor edits
Fix declaration of variables in are_we_there_yet
Rename compute_vorticity to curl and change interface.
wrap coftxyz as fft, cofitxyz as iff.
Implement nonlinear source term for mhd.
Rename GlobIntegrals to GlobalIntegrals, other minor formatting changes.
Remove deprecated parameters Ax, Ay, Az, x0, y0, z0
Fix a bunch of instances where the argument order of ifft/fft was
wrong.  (Fortran doesn't check that the argument type agrees?)
mhd now reads parameters.
Modify CFL condition to use total velocity.
nf now indicates number of 3D vector fields evolved.
Enable inegrating factor for time-stepping with multiple 3D fields (nf>1).
Enable field output for mhd.