* Switch to modern test expressions: [[]]
* Fix issues with spaces in arguments
* Allow overwriting output files
* Move IM options into microscope-specific section
* Add usage information
* Add numerous options
* Add check for IM and GNU Parallel
* Add support for multiple microscopes and implement cobra
* Add verbose command output
* Add trop for standard signals
* Automatically do line conversions for plate id files
* Add additional comments for clarity
* Print wells as, for example, B2, instead of 1x3.
* Implement joe microscope (but still untested)