Update README and TODO

Signed-off-by: Ignas Anikevicius (gns_ank) <anikevicius@gmail.com>
Refactor the code directory structure -> Makefile becomes smaller.

This is a major refactoring of the codebase. Mostly renaming. Also, I
have added a helper library to interface text files.

Signed-off-by: Ignas Anikevicius (gns_ank) <anikevicius@gmail.com>
Make it possible to read options from files

Signed-off-by: Ignas Anikevicius (gns_ank) <anikevicius@gmail.com>
Edit the header definitions in order to work with the new dir layout.

Signed-off-by: Ignas Anikevicius (gns_ank) <anikevicius@gmail.com>
Move the MCMC code, since it is not finished yet

Signed-off-by: Ignas Anikevicius (gns_ank) <anikevicius@gmail.com>
Make the tests work with the new framework

Signed-off-by: Ignas Anikevicius (gns_ank) <anikevicius@gmail.com>
Make the Makefile work properly

Signed-off-by: Ignas Anikevicius (gns_ank) <anikevicius@gmail.com>
Add rc files for the several routines.

This includes data generation and roq generation.

Signed-off-by: Ignas Anikevicius (gns_ank) <anikevicius@gmail.com>
Remove determinant checking during inversion.

BLAS and LAPACK are sufficient for checking when inversion fails.

Signed-off-by: Ignas Anikevicius (gns_ank) <anikevicius@gmail.com>
Fix a lot of bugs related to parsing

Signed-off-by: Ignas Anikevicius (gns_ank) <anikevicius@gmail.com>
Minor improvements and bugfixing to the libs.

Signed-off-by: Ignas Anikevicius (gns_ank) <anikevicius@gmail.com>
Update the test suite

Signed-off-by: Ignas Anikevicius (gns_ank) <anikevicius@gmail.com>
Update the main programs

Signed-off-by: Ignas Anikevicius (gns_ank) <anikevicius@gmail.com>
Add some wrapper, which will speed up stuff a lot.

Signed-off-by: Ignas Anikevicius (gns_ank) <anikevicius@gmail.com>
Some more refinements to the building tools

Signed-off-by: Ignas Anikevicius (gns_ank) <anikevicius@gmail.com>